Active deployments, research platforms, and select portfolio work.
A vertically integrated bioinformatics agency serving the St. Louis biotech ecosystem. Infrastructure, analysis, and talent — from a scientist who speaks the language.
A translational chemistry laboratory exploring new synthetic methodology in organic chemistry.
A Snakemake pipeline for DAF-seq (deaminase-assisted footprinting) data. Takes raw sequencing reads to per-haplotype chromatin accessibility tracks ready to load into a genome browser.
Benchmarking suite for DNA methylation detection methods. CNN/PyTorch framework for methylation classification from bisulfite sequencing data, benchmarked against traditional statistical approaches.
A command-line tool for pulling DNA sequence embeddings out of Evo 2, the genomic foundation model. Point it at sequences, get back embedding vectors for downstream ML.
Cloud-native tumor-normal sequencing pipeline for the NIH Common Fund's Somatic Cell Genome Editing program. Built with Nextflow DSL2 and DRAGEN hardware acceleration on AWS.
Machine learning-based pose estimation system for tracking zebrafish behavior in custom experimental rigs, enabling high-throughput behavioral analysis.
Transformer-based language models applied to biological sequence classification, exploring gene function prediction and regulatory element annotation.